MmuALTD0000126-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30651219-30651731:-
Coord C1 exon
chr2:30651665-30651731
Coord A exon
chr2:30651629-30651664
Coord C2 exon
chr2:30651219-30651325
Length
36 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AGGCATCTTTCTCCCTCTAGGAA
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGCCACCATCCCAAGGCCACGGGGAGGCCTCAGAACCTTCCTGGACACCCCTAACAATGTGGATCAG
Seq A exon
GTGGGCAAATGGCCCCATCCCTGGAACCAGAAGCTG
Seq C2 exon
GAATCCTTTCTGCCCAGTTTGGTGCTGCAGTCTGTCCTGAAGCAAGGCCGCCCTAAGGGCTACCAGCTGCTCCTGCCGTCCACCACAAACCGGCAGCAGGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-12-12,13-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGAACCTTCCTGGACA
R:
GAGCAGCTGGTAGCCCTTAGG
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: