MmuINT0019645 @ mm9
Intron Retention
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30680161-30681080:-
Coord C1 exon
chr2:30680972-30681080
Coord A exon
chr2:30680248-30680971
Coord C2 exon
chr2:30680161-30680247
Length
724 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CACCTCCCTCCTCTTTGTAGGGA
3' ss Score
10.29
Exon sequences
Seq C1 exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATG
Seq A exon
GTAAGAGAGACGCTGAGAGGTTAAGAGCACTGCTGCGGGCTGGAGAGATGGCTCAACGGGTAAAAGCACTGACTGCTCTTCTGAAGGTCATGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCACCCGTAACAAGATCTGATGCCCTCTTCTGGTGTGTCTTAAAAAATCTTAAAAAAAGAGCACTGCTGATCTTGCAGAGGATCCGGCTCAGTTCCCAGCACCCACAGGGCAGCTCACAACTGTCTGTAAATGTAGTGTCAGGGGATCTCGAGACCTCATAGCGCACACAAACATACATCATGCAGGCAAAGCACTCATACATAAAATAATAAAACTTAAGTGCTGGGGTGGAGGGCTGGCCATCCCTGGGGCTGGACACCTGTTAAGGGTTCAGAAAAGACAGGCCAAGTGCCTGGGTGCTGGCCCCAGTCGATGGCATGGCCACACCTGGCATACGGGCAGAGGGTGGCAATTTGCCTGAGTCCAGCACCCAGCGACTCTGGAGAGAGTGTGGTCACTGTCTGCACACTGCCCCAGGAAGCATCTTTAAGAGGTGAGTATACCCAGCGTCTGTGTGTGGATGCAGGCGGGTCTTAACCTTGCTTGGCCCTCTTATTCCTGTTTTTGTGTGGATGAAATCAAGCCAGCCGCTCTTCCCTCGGCCTGAGAATCCTGCTTCCACCCTCCTCTGGGCCTCACCTCCCTCCTCTTTGTAG
Seq C2 exon
GGAAGACAGCTTTACTTCACGCCCTGGCCAGCAGCGATGGTGTGCAGATCCACAACACAGAAAACATCCGGCTCCTCCTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-Asb6:NM_133346:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(41.9=100)
A:
NA
C2:
PF127962=Ank_2=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGAGCAGCCCCTT
R:
CCAGGAGGAGCCGGATGTTTT
Band lengths:
190-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: