DreINT0034020 @ danRer10
Intron Retention
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6864260-6864564:-
Coord C1 exon
chr8:6864456-6864564
Coord A exon
chr8:6864347-6864455
Coord C2 exon
chr8:6864260-6864346
Length
109 bp
Sequences
Splice sites
5' ss Seq
ACGGTGATT
5' ss Score
4.54
3' ss Seq
CTTGCTTTGCAATTTTGCAGGAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATTCATGAAAGCAGCCCTATTGACTTGGCCAGTGAGGAGGCTGATAAGCTGCCGTGTCTCCGTGTGCTTCTGGATTTTGGTGCTGATGTGAATGCAAAAGACAAGAACG
Seq A exon
GTGATTTATCTAAGCGACCTAGCAAAATAGAACATTTGTGGTTTCTTACTCTGTTTATATGTGATTGTTACTCTGTCGTTTGGCACATGCTTGCTTTGCAATTTTGCAG
Seq C2 exon
GAAAAACAGCACTGCTTCATGCTCTGGCCAGCAGCGATGGACTCACGGTCAAAAACATGGACAACATACAGCTGCTTCTAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125:ENSDART00000014915:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(59.0=100)
A:
NA
C2:
PF127962=Ank_2=PD(31.1=63.3),PF127962=Ank_2=PU(20.8=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAAGCAGCCCTATTGACT
R:
CTCTTTCTAGAAGCAGCTGTATGT
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]