HsaINT0013200 @ hg19
Intron Retention
Gene
ENSG00000148331 | ASB6
Description
ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:17181]
Coordinates
chr9:132400852-132401589:-
Coord C1 exon
chr9:132401481-132401589
Coord A exon
chr9:132400939-132401480
Coord C2 exon
chr9:132400852-132400938
Length
542 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TGCTCTCCCTCCCTCCCTAGGAA
3' ss Score
13.67
Exon sequences
Seq C1 exon
ATCCACGAGAGTAGCCCCTTGGACCTGGCCAGCGAGGAGCCTGAGCGCCTGCCCTGCCTGCAGCGCCTCCTGGACCTTGGAGCTGATGTCAATGCCGCTGACAAGCATG
Seq A exon
GTGGGTGCCTCCTGCAGGAAAGCAGGACAGCTGGGCCCCCAGGCACCTTGTGGGGGACACCCAGGGTGCCCCAGGACAACAGCTAGGTGGGCAGACTGGATGCTGGCCCTGGCTGGTGGCACAGCATGGCTGGGCACACAGGGATTCTGCTGACTTGCTGAGCTCAGAGGCTTCAGAGAGGCAGTGCAGTCATTGTCCCTGTGCTGGCCCTCAAGGGCCTTCTATAGGAAGAAATAGGGCATGTGTGCACTTAGTTTCCAAGAAACAATGGCTTCCCATTGGGAGAGGCCCAGCCAACATCTCAGGTAGCATCTTGGGGTCCAGAAAAATCCTACCTTTCCTGGCCTTTCCGCTCCCACTTCTCTGGGTGGAAAGGGAATGGCCAGAAGCCTGTCACCCTCAGCCCTCACCTGAGCTGAGAGTTGTCTCTGAAAGTTCATCTTCTGATCCTCTGAGTGTCTGGATTTCTGCCACCTCCTCTGGGTTGCCCTGACCTGGGCTTCCTGGCCTCCTGCTCCTCCTTGCTCTCCCTCCCTCCCTAG
Seq C2 exon
GAAAAACTGCTCTGCTCCATGCTCTGGCCAGCAGCGACGGGGTGCAGATCCACAATACTGAGAACATTCGTCTCTTACTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148331-ASB6:NM_017873:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(48.6=100)
A:
NA
C2:
PF127962=Ank_2=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTAGCCCCTTGGACCTG
R:
CTCCTTCCAGTAAGAGACGAATGT
Band lengths:
190-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)