RnoINT0021718 @ rn6
Intron Retention
Gene
ENSRNOG00000024786 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:RGD Symbol;Acc:1308445]
Coordinates
chr3:9661258-9661969:-
Coord C1 exon
chr3:9661861-9661969
Coord A exon
chr3:9661345-9661860
Coord C2 exon
chr3:9661258-9661344
Length
516 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATCTTCGCTCTGCTCCTTAGGGA
3' ss Score
9.07
Exon sequences
Seq C1 exon
ATCCACGAGAGCAGCCCCTTGGATCTGGCCAGTGAGGAACCTGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAACGCAGCAGACAAGAATG
Seq A exon
GTAAGAGATGGCTCAGAGGTTAAGAGCACTGGCTGTTCTTCCAGAGGTCCTGAGTTCAAGTCCCAGCATCCACACATGGCAGATCACAACTGTCTTTAACCGTGTTTCCAGGAGATCTGATGATCTCATCTGGTACAGACATACCTCATGTAGGCAAAGCACTCATACGTAAAGTAAGAAGAGTGCTGTGGTGGGAGGCTGGCCGTCCCAGGGACTGGGTACCTGATAAAAGTTCGGGAAGGACAGGCAGGTGTCTGGGTGCTGGCCCCAGTAGGTGGCATAGCCACAGCTGGCACCCAGGCAGAGGGTGCCAGTCTGCCCGAGTCCAGAGAGTGTTGTCACTGTCTGCACACTGCCCCGGGAGGCGTCTTTGAGAAGTGAGTATGCCCAGCAGGTCTCTCTTGGCCCTCTTGTTCCTGTTTTTGTGTGGGTGAAACGGAGCCGGCGGCTGGTCCCTCAGCCCTGAGAACCCTGCTTCCACCCACCTCTGGGCCTCATCTTCGCTCTGCTCCTTAG
Seq C2 exon
GGAAGACAGCGCTGTTGCATGCTCTGGCCAGCAGTGATGGGGTGCAGATCCACAACACAGACAACATCCGGCTCCTCCTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024786:ENSRNOT00000034927:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(46.8=100)
A:
NA
C2:
PF127962=Ank_2=FE(37.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACGAGAGCAGCCCC
R:
CCAGGAGGAGCCGGATGTT
Band lengths:
190-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]