GgaINT0125885 @ galGal3
Intron Retention
Gene
ENSGALG00000004378 | ASB6
Description
NA
Coordinates
chr17:6203594-6204266:-
Coord C1 exon
chr17:6204158-6204266
Coord A exon
chr17:6203693-6204157
Coord C2 exon
chr17:6203594-6203692
Length
465 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
ATTGTCTTTTCCTACTGCAGGAA
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
Seq A exon
GTTTGTGGGGTGCTTCCAGCAGGTGGGCTGGAGCAGGGCATGGGATCTGTGTCCCTTCACCTTGCTGCTGCAAATTCTGCCTGCTTTGGAAATGAATGTAGGCTGCAGAACCTTCCTGGTGCTCTGTGCTGTCTCCTAGTATCTTGTCTGCATTAGGTGCAGCAGGAGGCTAAAAGCAGCCCTGTGCAGCCCATGGAAGATGGGGGAGGGGGGGGTGAAGGTGGGGGGCGCGTGCTCTAAAAACACTCTGCCATGGCCCATGTGCCTTCTGAGGCCACCACCAGCCCCAGCTGTGCCACCACAGCTGTGCTCCATCACAGCAACATTGGGAGCCTGCTGGTAGAAGGGCTGTCTCCCTTGTGTTTAGCCATTGGGTTGGTGAAATTGATTATTTTCCTTCCTTCTGGGGGTGAGTGTTTCCAGGTGGAGCACTGTCTCACATCTGATTGTCTTTTCCTACTGCAG
Seq C2 exon
GAAAGACAGCGTTGTTGCACGCCTTGTTGCATTGTTATTGCAGCAGTGATGTCGTCCAGATCCACAACACAGAGAGCATCCGTCTCCTGCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378:ENSGALT00000006983:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(46.2=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGAGCAGTCCCCTT
R:
CCTTCCAGCAGGAGACGGAT
Band lengths:
206-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]