MmuINT0140491 @ mm9
Intron Retention
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26268356-26269965:-
Coord C1 exon
chr2:26269891-26269965
Coord A exon
chr2:26268434-26269890
Coord C2 exon
chr2:26268356-26268433
Length
1457 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TCCATCTCTGTGCTTCACAGGCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGGAAGTTCTACAGTATCAGCCCCTGGACCTGAGCTCTTACCCTCCAAACCAGATGGCTCCCAAGGAGGAGAG
Seq A exon
GTAGGGAACCCTGCCAGTATGAGTGCTGGGTGTGTGTGTGTTGTGTGTTACCTGTGCATTTGTGTATTATGTGTGTGCAGGAGAGGAGGTGAGGGCATGCATGTGCATGGGTGTGTGCATGTTGCATGTCTGTGTGGGTGTGGGTGTGGTGGGGTACTATGGCCTGGAATGGTGATTCAGCCAGCTCAGTGCACTTCCCTGTGGTGACTTTTTAGAAGTGTGCAAGTGAGTAGGAGAAGGAAGTGCAAGATGGCAGCACAGTGTGTTTGATTAACAGTAACACTTTAACTTGTATGATCACTTTTTCTCAGGTGCTCTGAGTCAGGTGTGGGGCTGACATCATCACTTTCTAGCCAGGTCTCCCTCACAGTATCCTTAGAATTTCAGAACTTTGAGGTGTCACAAAGTATGAGCTAAGAGCTAGACAGATTTTTTTCCTTTTCCAGCGTAATGATGGTTGTCTTAACCAAAACTGGGGGGGGGGGGGCATTTGATGCTACCTCTGGCTGTCTTCATTTGAGTGATATTGATTCTAATGGCATCATAAAGCTTTTAAAACCAGCTGACAGCTTGGAGCAATGGAGCATGCTGATCTTCATGTCTGTATCTTGTGTGTTCTTGCTGTTCCATAGCTCTCGCGTTGTAGCTCTCTGAGCTCGCTCTCACAGGAAGTGAGCCGGCATTTCCATCAGGTACCTGTGGCTGGTGGCTCCCTCCACGGGGCTGGCTATGTAGCTCCCATATGTCCCTTAGAGAGTCTGTCATCCTCTTTACTTTGTCACTAACCCCTTGTCTTAACCAAGCATCATGTGGGCAAAGATGCAGTTTTCCTTTATTAGATGGCCTGGGTCTAGATACGCTGGTGGTGGACTTGCCTCACAGGGTTCAGAGTGCTCAGGGAGCTTCCTAACTCTGCTCCTTGTGAAGTGGCCTGACCCCTTCCCTACCATGATCTCCTGAGTTAAGACACTACTTGGAAAGAAAGATTTCTTCTTGCTGATGAGGCTTGAGGAAGTCTGTTTGTAGCCAGTAGAAATGTGGACATGATAAGCCATCGTGTGGCCAAACTAGAGGAGACAAGGAACGCTTTTCATCCTCTGTTTTGGAGCCAGGCCATGTCAGTAGCTTTCAGTGGAAAGTCTGAGGGGACATTTGACTGTCCATGGCTGTAGAGCAGGCACACTGTCCAGGCCGCCTAACTGTTTGACCAGCACTAATGAAATGTCAGTGTCCTGCACTCACTGTCTGCATGTTGTTCAAATGATTTTCTGCATGGTGCTTTGACTTTGGCTGTCCCATGACCCATCCAGTAATGAAAACAAGTGTTACCAGAACTGTCTCTCTGGAGCCTATTTGGAGCGTTAATGGTTCTTTCTGAGTTATGGCTTGTGTCTGCTGCTGGGACAGCAACTGCTGTGTTACACTGACTTGCTGAGGTCCATCTCTGTGCTTCACAG
Seq C2 exon
GCTCCTGGAGACCATTGTCCTACAGGGGCCCCTCATGGTGGGTCTGTGCCCTTTTACAACCCTGCTCAGTTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-Sec16a:NM_153125:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: