MmuINT0073170 @ mm9
Intron Retention
Gene
ENSMUSG00000053164 | Gpr21
Description
G protein-coupled receptor 21 [Source:MGI Symbol;Acc:MGI:2441890]
Coordinates
chr2:37372146-37374801:+
Coord C1 exon
chr2:37372146-37372219
Coord A exon
chr2:37372220-37372578
Coord C2 exon
chr2:37372579-37374801
Length
359 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTCTCCTTTTCTTCTATCAGCTG
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATTCCTGCATTGCAAGGCTTTCGGTTAAGGATGTATTGTGGCTTTTGTTTGGATTTCAGCATGCAGAATCACAG
Seq A exon
GTAACACTCTGAAATTGAGCTAAGCAGATAAATTGTATTAAGGTGTTTGCAGAGATATAATAGTACATTGGATTTAATGGAGAAAATAATCTTGGTTAATTTTTATCAATGATAATGTCTTCAGGATTACCATAAGGAGATTCTCCTACAACACGTAAAATAAAAGAAAATGAGGGTTTATAATTTCTTTATGTTGATCTTGGAAGCATGGTATTGCTGTTCCTCCAAAGTAAGGGCCGTTTATGGAGGAGGCTGCTTAGGGTGAAGTGGGAGGGGTGCTGGCAGTCAGAGCTAGCTAGGTTCTTTGTCTAGGATGTGGAATGCAAAATGTAAAATGCTCTCTCCTTTTCTTCTATCAG
Seq C2 exon
CTGTTCAGAGGAGACTCATTACAACTCCTGCTGAAGCTACTAATCTTCCTCCCTCTGCCCCTCCCCCACCCACACTTGGCCTGAAGACACTGTCCCCAGTTTGCCTTACTCCCTTGCTATGTGTTTGGTGAAACTGGCAGTATGGCTGCGTCTGGGACTGGCCAGACAACTGCTGTTGGCTTTCCCTATTCCAGGAAGAATTTAAAGGGAAATTGTACAGCAGGCAGTATACCCACCACAGCAGCAACCTCAGGAACGTGATGACTAGGGCTCCCTGGCTTTGTCACAGGCATGCAAAGCTGACTGCAGTGACAGTAGCTGCTCCTGAGAACTGAGACAGCAGCCAGGTGGCAGCATGAAGTGAGAGCCAGTTCCTGAGCACGAGATGAACTCCACCTGGGATGGTAATCAGAGCAGCCATCCTTTCTGTCTTCTGGCACTGGGCTACTTGGAAACTGTCAGGTTCTGTCTTTTGGAAGTGCTGATTATTGTCTTTCTAACTGTATTGATTATTTCTGGCAACATCATTGTGATTTTTGTGTTTCACTGTGCACCTCTGTTGAACCATCATTCTACAAGTTATTTTATTCAGACAATGGCATATGCTGACCTCTTGGTTGGGGTAAGCTGCCTGGTCCCTTCCTTATCACTCCTCTACTACCCTCTTCCGATTGAGGAGGCCATGACTTGCCAAGTATTTGGTTTTGTAGTGTCAGTTCTGAAGAGTATCTCTATGGCTTCTCTGGCCTGTATCAGCATTGATAGATATATTGCCATCACTAAGCCTTTAACCTATAATACCCTGGTTACTCCCTGGAGACTACGCCTCTGTATTTTTCTGATTTGGCTGTATTCCACCCTGGTCTTCCTGCCTTCCTTCTTCCACTGGGGTAAACCCGGATATCATGGAGATGTATTTCAGTGGTGTGCAGAGTCCTGGCACACCAACTCCTACTTCACATTGTTCATCGTGATGATGCTGTACGCCCCAGCTGCCCTCATTGTCTGCTTCACGTATTTCAACATCTTCCGCATCTGCCAGCAGCACACAAAAGAAATCAGCGAAAGGCAAGCCCGATTCAGCAGCCAGAATGGGGAGACTGGGGAACCCCAGACCTGTCCAGATAAGCGCTATGCCATGGTCCTATTCAGAATCACCAGTGTGTTTTATGTCCTCTGGTTGCCATACATCATCTACTTCTTGCTGGAGAGTTCTACTGGCTGCAGCAGCCGCCTTGCATCCTTCCTGACTACCTGGCTTGCTATTAGTAACAGTTTCTGCAACTGTATCATTTACAGTCTCTCCAACAGTGTTTTCCAGCGAGGACTAAAGGGCCTTTCAGGGTCTCTGTGTACTTCTTGTGCAAGTCACACCACAGCCAAGGACCCTTACACAGTTAGGTGCAAAGGACCCCCTAATGGATCTCATATCTGAGGGGGGCTCATATATTCAGTCGCTCTATTTTCAAGGAGAAAGGATGGCTTTGGTTCAGTTTTTTTTCTCTCCATCTCTGCTTCCAGTTCACTAGAGAAGTAAGAGCAGCTACAGACTATCCAGATAACCTTCATAGTTTGCAGAAGTTGCTTCCTAAATGAGATTTAAAATTAGAAGAATCAGGATCATAAAAAGAATCACTCTTGATCCAGTTTTTGAAATGTCATGGAAGTGACTACAGTTCTCAGATTCAAAAGGAGTAAAGCCATAGTTGACACCTCTCCCCACTGGCGTGGCTGAATCTGGGTGTGAAAAGCATCAGCATGTTAAAAATAACCATTTTCTTGCCCCTTTCTGGATTCTTAAATGCAAGTTGGAATTTATGTGCAATTGGTTATCTTCTAACAGAAAATATTAACATATATTGATGAACTAGCAAGGATTTTCTTTATCTGTGCCAAAATATAACTGTACTGCAAGTTTCAGCATTCATTTGGATAGTGAAATATTTTCTTTTCTTGCCTTTTGAGAGCAATCTCCATAGGATGAGTAATGTGAGCACGGAATATTACTTTATAGAGTTTTGAAATGAAGCAACTGTGCAGTGAAGCCATACAGTGTGTGAGAGCCAGCTGCTTTCACGACATGCTTCTGAGCATCGTGAGCATGTGTGCAGTAATGACATTACAGTGCTCTTTCTGGGCCTCTGTCTGTAAATATTGAGAATGTGTACACTGAGTTGGATTTTTTATAACAAAATGTATTTAATCTAAATAAATAATAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053164-Gpr21:NM_177383:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000116=7tm_1=WD(100=74.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCATTGCAAGGCTTTC
R:
AGCCCTAGTCATCACGTTCCT
Band lengths:
345-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: