MmuINT0073170 @ mm10
Intron Retention
Gene
ENSMUSG00000053164 | Gpr21
Description
G protein-coupled receptor 21 [Source:MGI Symbol;Acc:MGI:2441890]
Coordinates
chr2:37516626-37520603:+
Coord C1 exon
chr2:37516626-37516699
Coord A exon
chr2:37516700-37517058
Coord C2 exon
chr2:37517059-37520603
Length
359 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTCTCCTTTTCTTCTATCAGCTG
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATTCCTGCATTGCAAGGCTTTCGGTTAAGGATGTATTGTGGCTTTTGTTTGGATTTCAGCATGCAGAATCACAG
Seq A exon
GTAACACTCTGAAATTGAGCTAAGCAGATAAATTGTATTAAGGTGTTTGCAGAGATATAATAGTACATTGGATTTAATGGAGAAAATAATCTTGGTTAATTTTTATCAATGATAATGTCTTCAGGATTACCATAAGGAGATTCTCCTACAACACGTAAAATAAAAGAAAATGAGGGTTTATAATTTCTTTATGTTGATCTTGGAAGCATGGTATTGCTGTTCCTCCAAAGTAAGGGCCGTTTATGGAGGAGGCTGCTTAGGGTGAAGTGGGAGGGGTGCTGGCAGTCAGAGCTAGCTAGGTTCTTTGTCTAGGATGTGGAATGCAAAATGTAAAATGCTCTCTCCTTTTCTTCTATCAG
Seq C2 exon
CTGTTCAGAGGAGACTCATTACAACTCCTGCTGAAGCTACTAATCTTCCTCCCTCTGCCCCTCCCCCACCCACACTTGGCCTGAAGACACTGTCCCCAGTTTGCCTTACTCCCTTGCTATGTGTTTGGTGAAACTGGCAGTATGGCTGCGTCTGGGACTGGCCAGACAACTGCTGTTGGCTTTCCCTATTCCAGGAAGAATTTAAAGGGAAATTGTACAGCAGGCAGTATACCCACCACAGCAGCAACCTCAGGAACGTGATGACTAGGGCTCCCTGGCTTTGTCACAGGCATGCAAAGCTGACTGCAGTGACAGTAGCTGCTCCTGAGAACTGAGACAGCAGCCAGGTGGCAGCATGAAGTGAGAGCCAGTTCCTGAGCACGAGATGAACTCCACCTGGGATGGTAATCAGAGCAGCCATCCTTTCTGTCTTCTGGCACTGGGCTACTTGGAAACTGTCAGGTTCTGTCTTTTGGAAGTGCTGATTATTGTCTTTCTAACTGTATTGATTATTTCTGGCAACATCATTGTGATTTTTGTGTTTCACTGTGCACCTCTGTTGAACCATCATTCTACAAGTTATTTTATTCAGACAATGGCATATGCTGACCTCTTGGTTGGGGTAAGCTGCCTGGTCCCTTCCTTATCACTCCTCTACTACCCTCTTCCGATTGAGGAGGCCATGACTTGCCAAGTATTTGGTTTTGTAGTGTCAGTTCTGAAGAGTATCTCTATGGCTTCTCTGGCCTGTATCAGCATTGATAGATATATTGCCATCACTAAGCCTTTAACCTATAATACCCTGGTTACTCCCTGGAGACTACGCCTCTGTATTTTTCTGATTTGGCTGTATTCCACCCTGGTCTTCCTGCCTTCCTTCTTCCACTGGGGTAAACCCGGATATCATGGAGATGTATTTCAGTGGTGTGCAGAGTCCTGGCACACCAACTCCTACTTCACATTGTTCATCGTGATGATGCTGTACGCCCCAGCTGCCCTCATTGTCTGCTTCACGTATTTCAACATCTTCCGCATCTGCCAGCAGCACACAAAAGAAATCAGCGAAAGGCAAGCCCGATTCAGCAGCCAGAATGGGGAGACTGGGGAACCCCAGACCTGTCCAGATAAGCGCTATGCCATGGTCCTATTCAGAATCACCAGTGTGTTTTATGTCCTCTGGTTGCCATACATCATCTACTTCTTGCTGGAGAGTTCTACTGGCTGCAGCAGCCGCCTTGCATCCTTCCTGACTACCTGGCTTGCTATTAGTAACAGTTTCTGCAACTGTATCATTTACAGTCTCTCCAACAGTGTTTTCCAGCGAGGACTAAAGGGCCTTTCAGGGTCTCTGTGTACTTCTTGTGCAAGTCACACCACAGCCAAGGACCCTTACACAGTTAGGTGCAAAGGACCCCCTAATGGATCTCATATCTGAGGGGGGCTCATATATTCAGTCGCTCTATTTTCAAGGAGAAAGGATGGCTTTGGTTCAGTTTTTTTTCTCTCCATCTCTGCTTCCAGTTCACTAGAGAAGTAAGAGCAGCTACAGACTATCCAGATAACCTTCATAGTTTGCAGAAGTTGCTTCCTAAATGAGATTTAAAATTAGAAGAATCAGGATCATAAAAAGAATCACTCTTGATCCAGTTTTTGAAATGTCATGGAAGTGACTACAGTTCTCAGATTCAAAAGGAGTAAAGCCATAGTTGACACCTCTCCCCACTGGCGTGGCTGAATCTGGGTGTGAAAAGCATCAGCATGTTAAAAATAACCATTTTCTTGCCCCTTTCTGGATTCTTAAATGCAAGTTGGAATTTATGTGCAATTGGTTATCTTCTAACAGAAAATATTAACATATATTGATGAACTAGCAAGGATTTTCTTTATCTGTGCCAAAATATAACTGTACTGCAAGTTTCAGCATTCATTTGGATAGTGAAATATTTTCTTTTCTTGCCTTTTGAGAGCAATCTCCATAGGATGAGTAATGTGAGCACGGAATATTACTTTATAGAGTTTTGAAATGAAGCAACTGTGCAGTGAAGCCATACAGTGTGTGAGAGCCAGCTGCTTTCACGACATGCTTCTGAGCATCGTGAGCATGTGTGCAGTAATGACATTACAGTGCTCTTTCTGGGCCTCTGTCTGTAAATATTGAGAATGTGTACACTGAGTTGGATTTTTTATAACAAAATGTATTTAATCTAAATAAATAATAGAGGGACAGCTGTCCAATTGTAATGTGAAAATATGTTTTTTAAAGTGACTGTAGTGTTTTCTGTTCTAATCCAAAGTCTTCAATGAGAACTGAGTCCACTGACGCAATCAGCCCAGGGTCAATGTAAACTGTCTGTCTTCTAAATAGTCAGCTAGCATCACAGTTTTGGAAAACATTTTTTGGACCCTATTAAGGAGGCCTCCTGGAAGGGGAGAAGGGGACTCTGGTTGGGCCAAGTCTCCTTCATGCTATCCTATTTTTGGAAAAAAATCCTTTGAGATACATTTCTTGCCTCACTTGTCTGGTTTTGTTTTTTCAAAGCATTAACAAATGTATAGAATTTTATTGTTTAGAACTCAAATGTTCTGTGTTTATATGTAGAGTTAACTTTTTAAAAGTGTCATTTTTATTGTCAGAAAAATTAATTGGCCTCTGCCTTTGGCTAGAGGTTGTAGTGTGCATACAACAGTTATATTTAGTGAAGTGGACAATGGAGGAAACCCAAAAAAGGACACAGATACTTTATAAAATAGGCAGATATGCCTCGGCTTTTCACCCTGATGTTAAAAGACTGTTCTTTTAAAAAAGAAGACATGTTTCTTTCCTTACACACACACACCATTCTGGTATTGCACCCTTGCAAACAAGGCAAGTAAATTTTACTTGTATATCCATAGCAGAATTTATTTGTTCTGTTTGCTGTGTTTTCTGATTTTCCTAAAACTCACTATCTAGACCAGACTGGACTGAACTCACAAAAATCCACCTGTCTCTGCTGGGATTAAAGATCCACCCTACCCTACTTCCAGCCAATTTTGATTTTATGTTTTAGACATTGATTTTATTTTAACCTCATATGTGTTCTGCTTTAAGTTTTTTAAGTGACTGAGAATTATAAAACCATTTAAACTTCAGATTCCAAGTTCTATTGGCAGGTGGGTCTCTTGAGTTCAAGGTCAGCTGCTGAGAGGAAGAGAGAAATAGATTCTGAGTTCTCCAAATCTTGCTTGTTCTTTATATGTAGTATTAGCCAAGTTTGGCTCTGATGATTCAGAATTTAGAGCTCATGCTGAAAATGCAGGGTTAGAAATAGCTTTGTTGGATTTCAGCTTCAAGGAGAAAATCTTTTCCCCTGGCTTCTGAAAAACAGTTTGTAATACATTTCTCCTTGCATTGCACAGCTCTATAGATTTGGTTTGGATTTGGTTTCATTTCCACATGGTGGCTCACAACCATCGCTAATGGGATGCAATGCCCTCTTCTGCTAGGTCTGAACACAGCTACAGTGTACTCAAATAAAATAAATAAATTTTTTTAAAAAAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053164:ENSMUST00000065441:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000116=7tm_1=WD(100=74.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCATTGCAAGGCTTTC
R:
AGCCCTAGTCATCACGTTCCT
Band lengths:
345-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types