MmuINT0052627 @ mm9
Intron Retention
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30252539-30253077:+
Coord C1 exon
chr2:30252539-30252667
Coord A exon
chr2:30252668-30252987
Coord C2 exon
chr2:30252988-30253077
Length
320 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACC
5' ss Score
4.51
3' ss Seq
TTGGGTATCTGTCTCTCCAGGCC
3' ss Score
8.06
Exon sequences
Seq C1 exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGCGTGGCTGGAAGCCTCATGGCCGTCGCCTGGTTCATCATCACGCAGGAAATCCTCACTCCGTTGTTCCCCAGGATAGCAGCCTG
Seq A exon
GTAACCACTTCCCCGTCCCAGCTCCGCATCCCTGCCCCTCCTGCACTTATATCTGGAGAGCTTTGTGTCGTGGATGGCACAAGGCTTAGAACCCACTGCCCTGGCTACCACCTCCCCCAGGGGCTTATGGGTCCCCCAGGTTCAGCAGTCACAGTGCCGTGTTCTGTCCTTGTCTCGGCACTTAAGAGACTTAGAGGGCAGCCAAAGTTTGTGGAGCTGTGGAGGAGGCTGTGGGGCTCCAGGAACTGTTGGGACGTCTAGCTTGGTGGTCTGCTCACACCTTCACTGCGGCCCTGGTTCTTGGGTATCTGTCTCTCCAG
Seq C2 exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACGAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-Dolpp1:NM_020329:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(26.0=77.3)
A:
NA
C2:
PF0156916=PAP2=PD(10.2=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTGCTGTACCACACCT
R:
GCTTCTGCCCTGGTTACTGTG
Band lengths:
214-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: