GgaINT0124678 @ galGal3
Intron Retention
Gene
ENSGALG00000004485 | DOLPP1
Description
NA
Coordinates
chr17:6043974-6045092:+
Coord C1 exon
chr17:6043974-6044102
Coord A exon
chr17:6044103-6045002
Coord C2 exon
chr17:6045003-6045092
Length
900 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACCACCTTGTCTATTTTCAGGCC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGTTTATTTGCTTTACCACACCTGGAGCCAAGTCTTATATGGAGGTGTGGCAGGAAGCGTTATGGCCATAGCCTGGTTTGCCTTCACACAAGAGATACTAACTCCTCTCTTCCCAAGGATAGCTGCATG
Seq A exon
GTGAGTCTCTATTCTGTGAAGGTTTTACTCTTGCAAGTCTACATTTCTTGGATCACCGTTGTGCTCATTAAATGAGCTTCTTGAAATGAGTTGGTACAAAAAAAAAAACAAAAACAAAAAAACAAAAACCCAAAGGTGTAAAAATTGTACCTCGCATCTGAAGGAAAACAAATGCAAAGGTACTTTAGTCTCTGAAACTGTTGTAGCTGTATAAGTCCTGTCTCCATGGGCTGATCAAACTCCTGTGAGCTATGTTATAAGTACTAGAAATGGGAATTCCTGGGTTCTGTTCCAGCTTTGATGGCTGTATAACTTGTTCTTCTGTGTTTTCTTCTGCATGTCTATACAAAAGATCACGTATGGATGGGGGAGAGAGGACATTTAAGAAACACGTTTGTAAGGCCCCTCTAAAGTTGTGGGTTGTGGCAGAGTATTGGTTAAGAAGTAGTTTTTCATATCGTAGAATGGTTTGGGAAGGAAGGGACCTTAAAGCCCCCTCAGTTCCAACCCCTGTTGTGGGTTGGGGGTCCCCAACCAGCTCAGGCTGCCCAGGCCCCTATACAGCCTGGCCTTGGGCACCTCCAGGCTGGGGGCCTCCGTAACTTCTTTGAGCAACTTCTTAATCAATTTAACAGCCAAGTGAGATTATAAAGCCATTTAAACTTAACATAGTCCAAAAAATAATATATAAGGAAAACAACATTATTTTCTTGGATTGAATTTAACAAGGAGCCTTCTTCCCAGACTTGAAGGATAATAGAATAGCAGTGTTATGTTTGAACCAGATTTTATGCTGTGTCGTTGTGTGTTAGGGTTGTTCTGTTTTTGTATTCTGATCAAAATTGGGGTAGAGAAAAAAAATCTAATTTCTCCACTTCCTACCACCTTGTCTATTTTCAG
Seq C2 exon
GCCCATTTCAGAGTTCTTTTTAATCCGAGACACCAGCCTCATTCCTAACATCCTGTGGTTTGAATATACAGTCACAAGAGCAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485:ENSGALT00000007143:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.4=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTTTACCACACCTGGAGC
R:
CTTGCTTCTGCTCTTGTGACTG
Band lengths:
214-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]