DreINT0059488 @ danRer10
Intron Retention
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3748023-3748382:+
Coord C1 exon
chr21:3748023-3748151
Coord A exon
chr21:3748152-3748292
Coord C2 exon
chr21:3748293-3748382
Length
141 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
CTTTCTTTTTGTGTTCTCAGGCC
3' ss Score
11.05
Exon sequences
Seq C1 exon
AGTTTACCTCCTGTACCACACCTGGAGTCAGGTGATTTATGGGGGCGTGGCTGGGCTCGTGATGGGCGTGGTTTGGTTTTTTATCACCCAGGAGGTGCTAACGCCACTCTTTCCCAAGATAGCAGCCTG
Seq A exon
GTAAATTACACACACACACACACACACACACACACACACACACACACACACACACACACGGACGTTCATAAACATGAATAATAAAGCAATTTACAGCAAATCAAAGGCACATTTTCACTGACTTTCTTTTTGTGTTCTCAG
Seq C2 exon
GCCGATCTCAGAGTTTTTCTTGGTGAGAGATACAAGTCTCATTCCCAACATCCTGTGGTTTGAATATACAGTAACCAGATCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915:ENSDART00000053609:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.6=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTACCTCCTGTACCACACCT
R:
TGGCTTCTGATCTGGTTACTGT
Band lengths:
218-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]