RnoINT0050551 @ rn6
Intron Retention
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8962190-8963475:+
Coord C1 exon
chr3:8962190-8962288
Coord A exon
chr3:8962289-8963385
Coord C2 exon
chr3:8963386-8963475
Length
1097 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTGGGTCTCTGTCTCTCCAGGCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
AATGCACCAAACAAATAACGCCAGGTTCCTGGACTTGCTGTGGAGGCATGTGCTGTCTCTAGGGCTCCTCACCGCGGCCTTTCTAGTCTCCTATAGCAG
Seq A exon
GTATGGAGGGAGGAGGAGCCCCACCCTGCAACCTGCCTACCTGGGGTCCTATTAGGTCTCAGTCTCTTTTGAATAGTCTCTGCGAATCTGGGCCCAGACACTCGATGTAGGTTTTGACTGGGAAAAGAACACAGTCTCTAATTTTAACAGACAGGGCTCCAGCTGCCCTTTCCAGTGTAGCAGAGAAGCAGTGATCTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTCCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGAGAAGCAGTGATCTTAACAGTAGTGTCATGCATTAGCCATTTGTCCCCAGCTTTCTGGGGGTGGGGTGTGGAGTGGAGTGGGAGCTATGCGGACAAGTTCCGGTTTAAGAGCTGGACAGAAAGGAGCAGGTGTGGAGATGGACTTGTTTCTGCAACCCTGCTGCCATCTGGACTTGCCCACTCTATCTGTGTTGTCTTCACACCTATACCCAGGCTCCTGAGGAACCTGTTAGAAACATTAGGCGTGGGGTATTGTGTAGGCCTTACCTGGTTGGTTCTCATGAATCTCCTTTCTGGCTTTGTCCCAGGGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGTGTTGCTGGAGGCCTCATGGCCATCGCCTGGTTCGTCATCACCCAGGAGATCCTCACCCCGTTGTTCCCCAGGATAGCAGCCTGGTAACCACCTCCCCTTCATAGCCTGTGTCCCACCCTCCTCAGTTACATCTGTGAAGAGTATTGTATCCTGGATGGCCCAGTGTCTGGGCCTCTAGTGGCACAAGGCTTAGAACCCACCCTCCTGGCTACACTCCTCCTCCACCAGGGGCTTACGGGTTTCTCAGGTTCGGCAACCAGAGTGCCAGTCCTTGCCTCAGCACTTAGAGACTTAGAGGGCGGCCAGAGTCTTGTGGAGCTGTGGACAAAGCTGTCGTGGCTCCAGGACTGTTGGGACATCTGGCTTGGTGGCCTGCTCACACCCTCACTGTGGCCCTGGCTTTTGGGTCTCTGTCTCTCCAG
Seq C2 exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACAAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663:ENSRNOT00000064557:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(30.6=100)
A:
NA
C2:
PF0156916=PAP2=PD(10.2=35.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAAACAAATAACGCCAGG
R:
GCTTCTGCCCTGGTTACTGTG
Band lengths:
183-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]