BtaINT0052106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99568692-99569442:+
Coord C1 exon
chr11:99568692-99568790
Coord A exon
chr11:99568791-99569313
Coord C2 exon
chr11:99569314-99569442
Length
523 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGCCTCTGCCCTTGGCCCAGGGT
3' ss Score
5.37
Exon sequences
Seq C1 exon
AATGCACCAAACGAACAACGCCAGGTTCCTGGACTTGCTGTGGAGGCACGTGCTCTCGCTGGGTCTCCTCACCGTGGCCTTTCTAGTCTCCTACAGCAG
Seq A exon
GTACAGCGGGAGGTAGAGGCCCCCCATCCCCGCCCTGACTCTGCCCATTGAGGTCTGGCTGGATTCTGGGACCTCATGGTGGACCCGAGCCCTGGAGCCTATGGGCAGGACCAGGAAGGGGGCCCCCAGCCTCTAGTTTAAAAGGCCAGGGCTCCAGCTGTCCCTTGCCTCCCAATCCTTGCTCTCTGCTGTTGGTGGGACCCGTGGTCCCAGCGTCAGCCATCTGTTCCCATGTCCTGAAGCAGTCCCTCACAGACAAACTCCCAAGTTCGAGGGCTGGACGTGTCCCCGCCACGCTGTCCCTTCACCTCTATAGCATCGGGAGCCCCTGTTGGGGTGTGGCCCCTTGCCTAATTCTGGAAGCAGCTCTGAGTCCGTGTGGCCCCAGGACTCTGTCCTCTCTGGGGGTGTCTCCCGTGTGCGTGCAGGGGTCCCCAGGGGAGCTGGCACTCGGGCGTGGGGCGCAGGCCGTGCAGGCTTGTGTGCGGCCAGCTCTGTGAACTTGCCTCTGCCCTTGGCCCAG
Seq C2 exon
GGTCTACCTGCTGTACCATACCTGGGGGCAAGTGCTCTACGGGGCCGTCGCTGGGGGCCTGATGGCCGTCGCCTGGTTCGTCTTCACCCAGGAGGTCCTCACCCCGCTGTTCCCTAGGATAGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922:ENSBTAT00000023834:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.4=100)
A:
NA
C2:
PF0156916=PAP2=PD(25.4=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCACCAAACGAACAACGC
R:
TGCTATCCTAGGGAACAGCGG
Band lengths:
223-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development