DreINT0059487 @ danRer10
Intron Retention
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3744942-3748151:+
Coord C1 exon
chr21:3744942-3745040
Coord A exon
chr21:3745041-3748022
Coord C2 exon
chr21:3748023-3748151
Length
2982 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTGTGTGTGTGTGTTTATAGAGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
AATGCATCAGACGAACAATGCTCGGTGTGTTGAATTGTTATGGCGGCATATATTGTCCATCATGCTACTGGCCGTGGCGTTGTCTGTTTCATACAGCAG
Seq A exon
GTAATGTTTGTGTTTTGTTCAAATCAGCAGGGAATATCTTTCCTTCTCAGTTACAACACGCGTTCAAGTGAAATAGCTTTTTGAATGAGGATAAATCATGTGGGATTTGTTTTTATCCATTGTGAGTTTCCTATTGGTGAATGTCCTGTAAGTGACAGATTGATCCCGCCCTCAAACCACTAAGCACCAATGAGAAAAAGAAAATGGAAAAATGGGTGGGAGTTACATTTACATCAGTGGTCACCAACTTTTTTTTTATCACCGCGGACCGGAGCCAACGTTTGACAATTTTACCATGGCCCGAGGGAGGGGGGGTGGATGTATGTAGATTGCTAGGCAACCATCAACAGTTCTTTCAGAGGATGACAAGCTGACAAATCAAAACATTGCTGCATTTATTTATGGAGAAAGTTATAAAGCACTGCAGTGTTTGGGTGTTCTGCACTTTCAACTAGGTTCGCCTGGAAAGTGTGAGCACATTGTGCCGCTTGCTTAACAAACTTGCATGCAGAAAAGATGCAATATTTGAACATCCCCTAAGGCCGCCATCATTTGCGATCTCAAGCAGTTGGTCTTCTTGCACAGACATGCTGGATTCACCTGATTTGTTGACAAATGGGTTGCGGATCCATTCCTTGTCAGTTTGTGGGTCCTTCATTGAGCCTTTTCCCTCTTTAGCACAGAAACTTTCAAAAGAGCGTACTCACACTATGCTATCAGAACCGTGCCCAGGTGCGTTTCCCAGATCGTTTGAGAAGTGTGAGTGCGTTGAATCGGCCTCAGGCACAATTCACTTGGCCGGCCCTGGCCCGGTTGGAAGAGGTGTGCCAGAGCGTGGTTCACTTAGCTTTGGCGCGGTACGCGGTACGCTAACTGAGCCCGAAACTGAAGACGAGACGTGACTTTTAAGGGACTGTTTGATATGGATTTGTTAATCATTCTTACTGTTTAATGAATGCAAACTGTCGTAGATTATTAAAAACACAAACCCCTCACTGCACGACAGCTGCACCTTCAGCAGACCTCCTAATTCCTGCAGCACGAGGACTTTATGATTGTTTATGAGCACCAGAAGTGGCTGATCTGTTCGGCAAAATATTTGACTGTGTGTCACCGCATATCAAACAACTAAAGCGATATAACTAAAGAAATCTCCACTGTGCTGAATGAAAGCTCTTACTGAACAGCGCCTCATCTATGACGTAAGCATTAGACCCGAATATAATGTGAGTGCAGGCCGTCGGGGGAGACGGGAGGGGGGACAAGCGTGCTTCAGCCCGGTTCAAGGCAACTGTACATAGTGTGAGTACGGCCTTACTCATTTTGCTGCTTGTGGGTTAAATTTTGGCGCTCAAGTGACCGAGATGTAGGCAAGAGAATACGGTCATTTTTCAATATGAAAGGATTTTCAAAGAAAAAGATCGTTCAGACTCGAATAATAAATAAAAACAGAAATAATTAATGATTTCTTGTGCGGCCCGGTACCAATTGATTCACAGACCGGTACCTGGGGACCACTGATTTACACCGATTAAATTTTCACTGCGTTTTGTAGAATTTCATGTCTACACCACAGTCTTTTCAAAACGATCCTTTTCACATATCACAGATCCATTACAATTATGAATTTTGTCTTTTCCAATATTTCCCAAAAGATGTTTAACAGAGCAAGGAAATTTTTACAGTATTTTCTATATTTTTTCTTTTTCGAGAAAATTTTTTATTTTGGCTAGAATAAAGGCAGTTTTTGATTTTTATGAAACCATTTTAAGGTCAAAATAATTAGCCCCCTTAAGCAATATTTGTTTTCGATAGTCTACAGCTGTGGTTCTTAAAGTGGGGGTCGGGACCCCCCCGAGGGGTCGCGGGACAATGAAGGGGGGTGGCCTGGTGATTTAAAAAATCTATTTATTTTAATAAACCATAAGAATTACCATATTTTATCTAAAACCTAGTGAAGAGAAAAAATAATTGTTTATAGTTACTATATACTATATATTTACTATAGTAGCTTATAGTTACTAGTTCTATTGATAGCGACCCCTGGGGTAATTGCATTTTATTAAAGACACAGCAATATCGTCAGATGCAGCAGATTGATTTTATAACACCAAGTTAAACTTTCTGGCCCATTTACAGCACTGACATGCATAGCACTTTTTTTTTAACAAAGAATAGACTTGGGTCTATTGGTGTGTGCGCCATTGCATGCAAGGTTTCTGTATTTATAACCACCACAGAAGATTTTGGGGGTCGCGAGTCAATGGCATTGTCATTTTGGGGGTCGCGGGCTGAAAAGTTTGGGAACCACTGGTCTACAGAACAAAACATCGTTATACAATAACTTGCCTAATTGCTCTAACCTACCTAGTTAACCTAATTAACCTATTTAAGCCTTTAAGTGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAGATGAGTTATTAAAACTATTATGTTTAGAAATGTTGAAAAAAATCTTTTTAAAGACCATTTTTAGAGATGTAAACAAAAACGATGGTCCAAACGTGTTTCCTGTTGTGCATTTTTAATTTTTATAGCCTCCGAGAATCCAGAAAGAGCTGCACATTTTGATAAATAATGCCATGATAGCTGTTTTAACATTAAGTTGTGATTGAATTGCCTCTTGTTACAGTTATGAAATAGTTTGATAACAAGCAGGACATTTTTAAGGACCTACAACATGACCACATTGAAATGGTCTATTAATATACAGGAGGTCTAATAATTCAGCAGGGCTAATAATTTTGACTTGTACTATATTTTTTTTTTCTGTCAGTATCACACACCTCTAACACAGGAACTATATTCTATTATTGATGCTTATTGTGTTTGTACCATAAAATAAATGCTGTGTTTGTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATAG
Seq C2 exon
AGTTTACCTCCTGTACCACACCTGGAGTCAGGTGATTTATGGGGGCGTGGCTGGGCTCGTGATGGGCGTGGTTTGGTTTTTTATCACCCAGGAGGTGCTAACGCCACTCTTTCCCAAGATAGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915:ENSDART00000053609:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.6=100)
A:
NA
C2:
PF0156916=PAP2=PD(25.6=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]