HsaINT0051500 @ hg38
Intron Retention
Gene
ENSG00000167130 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:29565]
Coordinates
chr9:129085518-129086267:+
Coord C1 exon
chr9:129085518-129085616
Coord A exon
chr9:129085617-129086138
Coord C2 exon
chr9:129086139-129086267
Length
522 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CGCTTCTGGCCTTGGCCCAGGGT
3' ss Score
4.2
Exon sequences
Seq C1 exon
AATGCACCAAACAAACAACGCCAGGTTCCTGGACTTGCTGTGGAGGCACGTGCTCTCCCTGGGACTCCTCGCTGTGGCCTTCCTAGTCTCCTACAGCAG
Seq A exon
GTATGGAGGAGGGAGAGCCCCTGCCTGCACCCTGCCCATGTGGGGTCCTGCTGGTTCCTGGTCCCTGTCGGACCCCACCATGGACCCTAGTCCCAGAACCTGTAGTGCAGGACTGGAAAAGGGGTCCCAGACCTCTAGTTTTAAAAGGACAGGGCTCCAGCTGCCTCTTCTAGCCCAGTCCGCACTGAGCCCAAGATTCTGGGACCAACTCCACGTATCAGCCATCTCTTCCCAGCGTTCCGGAGGAGCCCACTGTAGACAAATTCAGAGGTCAAGGGCTAGATGGGAGGCAGGCAGATCCCAGCTGGCCCTTCACTGCTACAGATGGGAGAGCTGTGTTTGGGGTCCAGCGCCCTCCCACTTGGAAATGGATCTGAGGCTGTGCCCCGTGGAGTCAGTGTCCTGTCTGTGTCTCCACATGTGTGGGCACAGGTCCCTGGGAAGCTGGCACATGGGCAGTGGGGATTGTGCGGGCCTGTGTCTGACTGGCTCTCACATACTTCGCTTCTGGCCTTGGCCCAG
Seq C2 exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGCTCTATGGAGGCATCGCTGGAGGCCTCATGGCCATCGCCTGGTTCATCTTCACCCAGGAGGTCCTCACCCCGCTGTTCCCCAGGATAGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130:ENST00000372546:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
NA
C2:
PF0156916=PAP2=PD(26.0=77.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAACAAACAACGCCAGG
R:
CAGGCTGCTATCCTGGGGAA
Band lengths:
224-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development