GgaINT1011797 @ galGal4
Intron Retention
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5488583-5489701:+
Coord C1 exon
chr17:5488583-5488711
Coord A exon
chr17:5488712-5489611
Coord C2 exon
chr17:5489612-5489701
Length
900 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACCACCTTGTCTATTTTCAGGCC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGTTTATTTGCTTTACCACACCTGGAGCCAAGTCTTATATGGAGGTGTGGCAGGAAGCGTTATGGCCATAGCCTGGTTTGCCTTCACACAAGAGATACTAACTCCTCTCTTCCCAAGGATAGCTGCATG
Seq A exon
GTGAGTCTCTATTCTGTGAAGGTTTTACTCTTGCAAGTCTACATTTCTTGGATCACCGTTGTGCTCATTAAATGAGCTTCTTGAAATGAGTTGGTACAAAAAAAAAAACAAAAACAAAAAAACAAAAACCCAAAGGTGTAAAAATTGTACCTCGCATCTGAAGGAAAACAAATGCAAAGGTACTTTAGTCTCTGAAACTGTTGTAGCTGTATAAGTCCTGTCTCCATGGGCTGATCAAACTCCTGTGAGCTATGTTATAAGTACTAGAAATGGGAATTCCTGGGTTCTGTTCCAGCTTTGATGGCTGTATAACTTGTTCTTCTGTGTTTTCTTCTGCATGTCTATACAAAAGATCACGTATGGATGGGGGAGAGAGGACATTTAAGAAACACGTTTGTAAGGCCCCTCTAAAGTTGTGGGTTGTGGCAGAGTATTGGTTAAGAAGTAGTTTTTCATATCGTAGAATGGTTTGGGAAGGAAGGGACCTTAAAGCCCCCTCAGTTCCAACCCCTGTTGTGGGTTGGGGGTCCCCAACCAGCTCAGGCTGCCCAGGCCCCTATACAGCCTGGCCTTGGGCACCTCCAGGCTGGGGGCCTCCGTAACTTCTTTGAGCAACTTCTTAATCAATTTAACAGCCAAGTGAGATTATAAAGCCATTTAAACTTAACATAGTCCAAAAAATAATATATAAGGAAAACAACATTATTTTCTTGGATTGAATTTAACAAGGAGCCTTCTTCCCAGACTTGAAGGATAATAGAATAGCAGTGTTATGTTTGAACCAGATTTTATGCTGTGTCGTTGTGTGTTAGGGTTGTTCTGTTTTTGTATTCTGATCAAAATTGGGGTAGAGAAAAAAAATCTAATTTCTCCACTTCCTACCACCTTGTCTATTTTCAG
Seq C2 exon
GCCCATTTCAGAGTTCTTTTTAATCCGAGACACCAGCCTCATTCCTAACATCCTGTGGTTTGAATATACAGTCACAAGAGCAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485:ENSGALT00000007143:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.4=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTTTACCACACCTGGAGC
R:
CTTGCTTCTGCTCTTGTGACTG
Band lengths:
214-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]