MmuINT0087344 @ mm9
Intron Retention
Gene
ENSMUSG00000026764 | Kif5c
Description
kinesin family member 5C [Source:MGI Symbol;Acc:MGI:1098269]
Coordinates
chr2:49599885-49600266:+
Coord C1 exon
chr2:49599885-49599986
Coord A exon
chr2:49599987-49600205
Coord C2 exon
chr2:49600206-49600266
Length
219 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GATTCCTTTCTGTCTCTCAGATT
3' ss Score
9.8
Exon sequences
Seq C1 exon
TTTGAATCAGAAACTGCAACTGGAACAGGAGAGGCTCAGCTCTGATTATAACAAGCTGAAAATAGAGGACCAGGAGAGAGAAGTGAAACTGGAGAAGCTCCT
Seq A exon
GTGAGTGCCTTAACCCTCCCTGACTCGTCATCCCCTCCCACTCCCCAGGGCCAGCCCTAGTGGAGCCCTGGAGACTCCTGCTGTTCAAAGCAGCAGTGGCTTGCTTGGGCCTTTCTCTGCCTAGCCTTCCTTGCTGAGGTATGCCTGAGGTGCAAACTGCATCTGCTCCAATTCTGGTGCTGCTGCCTCAGTGGCTCACGATTCCTTTCTGTCTCTCAG
Seq C2 exon
ATTGCTCAATGACAAAAGGGAGCAAGCCAGGGAGGACCTCAAGGGACTGGAGGAGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026764-Kif5c:NM_008449:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAACTGCAACTGGAACA
R:
ACAGTCTCCTCCAGTCCCTTG
Band lengths:
156-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: