GgaINT0045233 @ galGal3
Intron Retention
Gene
ENSGALG00000012462 | Q6V1L3_CHICK
Description
NA
Coordinates
chr7:36454308-36454819:+
Coord C1 exon
chr7:36454308-36454409
Coord A exon
chr7:36454410-36454758
Coord C2 exon
chr7:36454759-36454819
Length
349 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATGTTGTGGTTTTTTTTTAGACT
3' ss Score
8.6
Exon sequences
Seq C1 exon
TATGAATCAGAAGCTGCAACTGGAACAAGAGAAGCTGAGTGCTGATTATGATAAATTAAAAATTGAGGACCAGGAGAGAGAAATGAAACTGGAAAAGCTCAT
Seq A exon
GTAAGTCAACTGTTTTCTCACCTGGTGTCCTTGAATCTGGTGTCTTTTAATGTGTGCACAGGAAACATCCTGGTGGGAAGCATTTGTGTTGAAACATTCATGCTGAAAATAGCATTTCAGTAGCAAAGCCAACATGAAGTAGAAATGAATGATTACTAATTACTCCTTTTTTAACGTTTTAAGCTTTCTAACAGTAGATTCAGTGCTTGCTGAAAAGGTGTTTTAGAGCTCCAATTTTATGAAATATCATGGCAAATCTTAAATCCCCCATTTCTTAACACACAGGAAAAAGAGAGAATATTTGTAAAACATTTTTGATTTAATGTTTAATGTTGTGGTTTTTTTTTAG
Seq C2 exon
ACTGCTTAATGATAAAAGGGAACAAGCAAGAGAAGATCTCAAGGGGCTGGAGGAAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012462:ENSGALT00000037795:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(23.0=100)
A:
NA
C2:
PF041569=IncA=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]