RnoINT0079543 @ rn6
Intron Retention
Gene
ENSRNOG00000004680 | Kif5c
Description
kinesin family member 5C [Source:RGD Symbol;Acc:1308539]
Coordinates
chr3:35223362-35223752:+
Coord C1 exon
chr3:35223362-35223463
Coord A exon
chr3:35223464-35223691
Coord C2 exon
chr3:35223692-35223752
Length
228 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GATTTCTTTCTGTCTCTCAGATT
3' ss Score
10.24
Exon sequences
Seq C1 exon
TTTGAATCAGAAGCTGCAACTGGAACAGGAGAGGCTCAGCTCTGATTATAACAAGCTGAAAATAGAGGACCAGGAGAGAGAAGTGAAGCTGGAGAAGCTCCT
Seq A exon
GTGAGTGCCTTAAATCTTCCCCAACTTCTCATCCTTGGGAGGACCCGAGGACCAGCCCTAGTGGAGCCCCAGAGATTCCCGCTGGGCCACTGACAGCAGCTGGTGTTGAAAGCAGCAGTGGCTTGGGTCGCTCTTTGCTTAGCCTTGCTCATATGCCTTAGGTGCTAACTGCATCTGCTCCGCTTCGAGCGCTCCCTTGGTAGCTCATGATTTCTTTCTGTCTCTCAG
Seq C2 exon
ATTGCTCAATGACAAAAGAGAGCAAGCCAGGGAGGACCTCAAGGGACTGGAAGAGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004680:ENSRNOT00000006341:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGCTGCAACTGGAACA
R:
ACAGTCTCTTCCAGTCCCTTGA
Band lengths:
156-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]