DreINT0086538 @ danRer10
Intron Retention
Gene
ENSDARG00000076027 | kif5c
Description
kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
Coordinates
chr9:23376664-23377206:-
Coord C1 exon
chr9:23377105-23377206
Coord A exon
chr9:23376725-23377104
Coord C2 exon
chr9:23376664-23376724
Length
380 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
ATTATTGTTGTTTTAATCAGCTT
3' ss Score
5.5
Exon sequences
Seq C1 exon
TGTGAACCAGGCTCTTGAACTTGAACAGAAGAAGCTCATGTCTGACTACGAGAAGCTCCAACAGGAGGACCAGAAGAAGGACGAAAGGCTACAGAAGCTTCT
Seq A exon
GTGAGTTCACTGCTCATTAAAACATTATCTAAATCATCTGCTAATGAAGATTAAAGGTATAGTTAATTCAAAAAATGGATATTTATTCACCCTTCACCTCAAACCTTGAGAATTTCTTTCTTTTGTTGAACACAAAAGAAGATGTTTTGAAAAATGTTGTAAACCAGTAGCCAATGACTTCCATAGTAATTGTTTATTCTACTATGTAAATAGTTACTGGTTTCCAACATTTTGTGTTCAGCAGGAAAAAGAGGAAGGTTTGGAAGCATCTGAGGGTGGGCGAGCTGTCCCTTTACAGATAGATTTTAAATTTAAGCAGCTACAGTATGTGCAACTCCTAAAAACCTTTCTAATCGCATAATTATTGTTGTTTTAATCAG
Seq C2 exon
CTTTTTGAATGAGAAGAAGGAGCAAGCTAAAGAAGATCTGAAGGGTCTGGAGGAGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076027:ENSDART00000083567:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]