RnoINT0079519 @ rn6
Intron Retention
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54207926-54209290:+
Coord C1 exon
chr17:54207926-54208027
Coord A exon
chr17:54208028-54209229
Coord C2 exon
chr17:54209230-54209290
Length
1202 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TAATTGTTGCTTCAATTTAGGGT
3' ss Score
8.01
Exon sequences
Seq C1 exon
CCAAAACCAGAAGATGGTGTTGGAACAGGAGCGGCTAAGGGTGGAGCATGAGAGGCTAAAGGCTGTAGACCAGGAGAAGAGCAGGAAGCTGCATGAGCTCAC
Seq A exon
GTGAGTGCTGCTTGGGTTAAAGCTTACAAACACAAGGCTGCAGGTACTGCCCATGGGCATGGCTGTCTTCTTTCTGCATTGCTTTAATTTGTGACATGTGCTTATTTTTGAGTGAAAGCAAGACTACTTATGTTTCTCAGACTGCCTGCTGTTTTCTTGGTGTCTATAGTACTTCAGAATCTATCATAAAGACCATCTTAAAATCTGATAATAACCTAGAAAATTGTGGGATATACTTCTATTGCTACATTTTGTCAAATTTGATTTTTCATGAAATCATTTGTTTTGATCTTCTTTTTAAAATAAAGTTGTAGTGTTCGGTTTTTGTTTTCCCACCTTCTCTCAATGCGTGTGAATGGCCTGCTCAGATTTATTCATGTTTACCATGTACATGCCTGGTACCCACAGAGGTCAGGAATAGGTGATGGATCCCCTGAAACTGGAGCCACAAACTGTTGAGTCAGCATGTGGGTTCCGGGAATCACACTGGAGTCCTCTGCAAGAGTCTCAAGTGTTCTCAGCTGCCAGACCAGCTACCCCTAACCTTAATTTCTTGAGCAGAGATTTTCCCCCTTGCTTTTTCTCATTCACTGTGAGTTACTGGCTTTCTAGAGTCTTGAGTTTTAAGAAATAATTTGCAAGTAAGCTACAGCATTTAGATGTTACACCAGAGGAGCAGTTGAGAGTGCATTGCATGAAGGTTCTGCTCGGGGCTGGGAATGTGCCAGGTGTGCACAAGGGCCTGGATTTAAGTCCCAGCTCTGCAGTGAGGGATGGGGTTGGAGTGGGGAGATAGAAGATTCTGCTGAATTTCAGCTATACTTTTATATAGTGTAAAATGCTTTAGTCTCAGACAAATTTTATTATCAACAACTTCCACTTAGTATCTTTTTAGATAAATAGCAGTTTACTCTGTGTACCATATTTTAAAATAAAAGCCATCCTTATATGAACTCTGGCACATACTGTTTGATCTCTTCCATTGCTGTATGAGCCCTGTTTCTCCTAATAAGCTAGATAATGAAGAAGAGATGGAAATGCATACATGCAGATCCCTTCAAAAGGTACTGCATGGGCAAACTGTTGTTTAAGTGTAAGCATATTTCTATTTGAGTTTAATAAAGTTTGATGTAATTTTTGCTAAATAAAGTTGGAATTTATGGAATCAATGTTGAAAGCATGTAATTGTTGCTTCAATTTAG
Seq C2 exon
GGTTATGCAAGACAGACGAGAACAAGCAAGGCAAGATTTGAAGGGGTTGGAAGAGACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466:ENSRNOT00000023861:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]