GgaINT0101243 @ galGal3
Intron Retention
Gene
ENSGALG00000007215 | E1C3A1_CHICK
Description
NA
Coordinates
chr2:14142755-14144466:+
Coord C1 exon
chr2:14142755-14142856
Coord A exon
chr2:14142857-14144405
Coord C2 exon
chr2:14144406-14144466
Length
1549 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
ATGAATGTATTCTCTTTTAGGGT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCAAAATCAGAAGATGATGCTTGAACAGGAACGTCTTAGAGTTGAGCATGAGAAGTTGAAAGCAACCGATCAGGAGAAAAGTAGAAAACTACATGAGCTTAC
Seq A exon
GTAAGTGATAATCTCACATAAAACAAGTGTGTGGAGGAACTTTTTCTTTTGAACTAGTGACCTGATATGATGATGAAGTTGCGTTCACTGTGTGGTAGATATGCTTATTAAAGGGAGGCTCCAGAGCCACCTTGAATTTAATCTTTTTAGAACCTTTTTCACCTCCGTAGTGTATATATAGCTGGAAGTAAAATAATGAAGGGTGCAAAGGTGTCATGGTTTTATGTGACAAAAGGCCTGGTATTTTTCAGTGTTAACGTGCTACAGGTTGGAGCAGTTAACTTCACATTTTCACACCTGAGTTTTGCATGCTGTAAGACTAGAAGAGCCTTGCGTTAACATGATAACAGATCCTTACTGTTTCTAGTTCTTGTGTGGTTTAGCTAGTTAGGTAGTTCTGTCTTAAATTGTAGAAATTCAAACAATCAGACTTGATTGATCTGTATGAGTAAGCAATAATCAGCACATTCTTTTCAGGACATACGTTGTTGGTTAAGTTGACTGAAATTTGAATAATAGTGTGTCTTAAGTCCACTGTATTTATTCTAGATACTTCTCACCATCAGTTGCAATAGATTTTCTCGTAATAGAAGATTCAATAAACATACCACGTGTTTGTTTTGTATTTTGTTTTGCAGGCTAATAAAAGAAATATACAGCGTTGATCTCTTAAAGAGACTTGCTGTGTTAGAAACTTTGCCCTTCCAAGGATCTGCAAGAAACATTAAAAATTGATTTGATACTGTTCTCCTTCAGACCAGTTATTTTCCATTGCACATCATAAATGTGCTGGCAAAGGACAGACCAGAAATAATGCTGATTATTCACATTTTATTGTCCTAAATAGTTGTATGAGGTGTCTACAGCTACTTTTCCAGTGAGGTCTGGAAAATGGATAGAATGCTGATGGATTCTTTAGCATATTTGATCATCTCAGATGTTTAATCATTTAGCTGCGATCTGGTAATGTAAATGGGTGAGGAGAACTTTCAAGAGTGTTAGCAGTGCAGTCAGTGCTTTCACATTAAGTAGGAAGACAGGAGCTCTGCAGAGCAGTATTGTTGGGTTATATTCCTGGAAACTGAGATTCCATTGCTTAATGGTGCAAGCTTTGGCAAATGTAATGGAGGTGAGGTGGTGGAACAAAAAGATAAAATCCCATATCCATCGCTTGATATTTAACACATTCACAGATGATTGAAGAGAAGAGCATTTGTAGAATTAAGATTTTCACCGGTGTTACTGAACTTGATTCTGAAAAATCTTCCTTCGCTCATTTTATTAATTTATTATTTAGATAGCTGAAAGTTTGTTTTCTTGTTTGTGTCCTTTCAGTATTAGAAGCTCTCCTTCTTTGCCGTTTGCAGCTTCCTTCCTTGCTCCATGTGAATTTGAGTTGTTGTGTCATCAGTTGGTTACATCCATAATTGTGAGGGCTTCAGCTGAAAAATAGGTGTTTTTCATTTGAACCATATGGTTTACCACTCTTATCTCCTAAAGCATTTCCAGTTTTGCTCAGATGCATGAGGATGAATGTATTCTCTTTTAG
Seq C2 exon
GGTTATGCAGGACAGACGGGAACAAGCGAGGCAAGATTTAAAGGGTTTGGAAGAGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215:ENSGALT00000011680:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(9.0=40.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]