BtaINT0082145 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33657668-33658559:+
Coord C1 exon
chr13:33657668-33657769
Coord A exon
chr13:33657770-33658498
Coord C2 exon
chr13:33658499-33658559
Length
729 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
TATATTCTCCTACTGTTCAGGGT
3' ss Score
7.05
Exon sequences
Seq C1 exon
CCAAAACCAGAAAATGATGTTAGAGCAAGAACGCCTGAGAGTAGAACATGAAAAGTTGAAAGCTACAGATCAGGAAAAGAGCAGAAAACTACATGAACTTAC
Seq A exon
GTGAGTAGATGTTTTGATTCAAGTTTAAAAATAAAAAACTAAGTTAGAGAATTGCAGGCATTGCTCTCAGTTATATTCAGTGGATAAATGTTTCACTTTGTGTAGGCGAAGGGGTGTTTTTCTTAAACTCTCTGAGTTGGTTTGATTTATACCTAAAAACATGCAATACATTCTAGTACTTTAGTGAAAGCAAGGTCTTATATTTCGCTGATAATTAAGATTCAGATTAATTACTTCAAGATCCATCATAAAAATAAACCTAAAGCGTGACATTTAGAAGTTTAGATTTCAGGATCTGCCACAAAATCTGTTTTTGTCAGATTTGATCTTGCATAAAAACACATTCTTTTTTGTCTTCAGTAATTTATAACCTGTAATTTTCCTTAAGTCAGAGTTGTTTCTGATATGCTATATGATAATACATACTCTAAAATTTAGAAAGAACCACTCCTTATTCCTTATGCCGCTTATTCTTTCATCTCTCCCATTGCTATGACAGTTCTTTCCTGATAACCTATAGATTTTAGAAGATTATAAGGCATATGGAAATTTCTTTGAAAGGCTAAACATTGGTAAATTTTTTCAAAATAAGATCTTTTTCGTATATGAATTTAAGCATTGATCCTGTCAGATAAAAATATTTGATTGAATACTTGTGCTAAATAAAACTAGACTTTATGGACTCAAAAGCGCATATTTACTGTATTTGTATATTCTCCTACTGTTCAG
Seq C2 exon
GGTTATGCAAGATAGACGAGAACAAGCAAGACAAGACTTGAAAGGTTTGGAAGAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280:ENSBTAT00000033899:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development