MmuINT0087319 @ mm9
Intron Retention
Gene
ENSMUSG00000006740 | Kif5b
Description
kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
Coordinates
chr18:6211190-6212616:-
Coord C1 exon
chr18:6212515-6212616
Coord A exon
chr18:6211251-6212514
Coord C2 exon
chr18:6211190-6211250
Length
1264 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TAACTGTTGCTTCAATTTAGGGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCAAAACCAGAAGATGGTGTTGGAGCAGGAACGGCTAAGGGTGGAGCATGAGAGGCTGAAGGCTACAGACCAAGAGAAGAGCAGGAAGCTGCACGAGCTCAC
Seq A exon
GTGAGTGTCACTTGGGTTGAAGTTTGCAGATACAAGGCTGTAGGTACTGCCACGGGCATGGCTGTCTTCTCTCTGCCTTGCTCTGATTTGTGACATGTGCTTGGTTTTGAGTGAAAGCAAGACTGTAGTCCTGTTTCTAAGACCGCCTGCTCCTTTCTTGGTGTCTAATATTTCAGAGTATATCATAAAGACATCTTAAAATCTGATGATAATCTAGAATATTGTAGGATATGCTTCCAAAACTATATTTTGTCAAATTTAGTTTTTCATAAAACTATATGTTTTGGTCTTTGGTTTTTCAAATAAAGTTTTGGTGTTTGGTTTTTGCTTTTGTTTCTCCCTTCCCTTGCCCCCATTAATGTATATGAATGGCCTGCCCACATTTTTTCATGTTTACAGTGTGCATGCCTGGTACCCATAGAGGTCAGAAAAAGCTGATAGATCCCCTGGAACTAGAGCCACAGACTGTATTGAGTCAGCCTGTGGGTGCTGGGGATCAAACTGGTGTCCTCTAACTGGCGTCCTCTGCAAGAGTCACAATTGTTCTCAACTGCCAGAATAGCTACCCCTTACCCTTAATTTCTTCAGCAGGGATTTTTCCCCCTTTCTTTTTCTCATTCACTGTGATTTATTGGCTTTCTAAAGTCTGAGTAGGTAAACAACTCATGATGATATTCTTCCACATCAGGGCCTTGAATTTTAGGAAATAATTTACAAGTAAACTGCAGCAGTTAGGATGGTTACACCAGAAGACCAGTCATAGTGCATTGCATAAAGGTTCTTCTGAGGGCTGGGAATGTGCCAGGTATGAACAAGGCTCTTGAGTTGAAGTCCCAGCTCTGCAGTGAGGGTGGGGAGTATAGAATTCTGCTGAATTTCAGCTAGAGTTTTATATAATGGAAAATACTTTAGTTTCAGGCAAATTTTATTATCAACAACTTCTACTTAGTATCTTTTTTGGATGAATAGCAGTTTTCTCTGTGTACCATACTTGAAAATAAAAGTTATCCTTATATGAATTCTGGCACATACTGTTTGATCTCTTCCATTGCTATATGAGCTCTGTTTTGCCTAAAGAAACTAGGTAATGAAAAAGAGATAGAAATACATACATACAGATTTCTTGAAAGGTACTGCATGGGCAAACTGTTGTTTAAATATAAGCATATTTCTATTTGAGTTTAATAAAGTTTGATTTAATTTTTGCTAAAGTTGGGATTTATGGAATTAAAGTTGAAAGGATGTAACTGTTGCTTCAATTTAG
Seq C2 exon
GGTTATGCAAGACAGACGAGAACAAGCAAGACAAGACTTGAAGGGTTTGGAGGAGACCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006740-Kif5b:NM_008448:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(8.6=37.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: