GgaINT0045233 @ galGal4
Intron Retention
Gene
ENSGALG00000012462 | kif5c
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE00]
Coordinates
chr7:34326241-34326752:+
Coord C1 exon
chr7:34326241-34326342
Coord A exon
chr7:34326343-34326691
Coord C2 exon
chr7:34326692-34326752
Length
349 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATGTTGTGGTTTTTTTTTAGACT
3' ss Score
8.6
Exon sequences
Seq C1 exon
TATGAATCAGAAGCTGCAACTGGAACAAGAGAAGCTGAGTGCTGATTATGATAAATTAAAAATTGAGGACCAGGAGAGAGAAATGAAACTGGAAAAGCTCAT
Seq A exon
GTAAGTCAACTGTTTTCTCACCTGGTGTCCTTGAATCTGGTGTCTTTTAATGTGTGCACAGGAAACATCCTGGTGGGAAGCATTTGTGTTGAAACATTCATGCTGAAAATAGCATTTCAGTAGCAAAGCCAACATGAAGTAGAAATGAATGATTACTAATTACTCCTTTTTTAACGTTTTAAGCTTTCTAACAGTAGATTCAGTGCTTGCTGAAAAGGTGTTTTAGAGCTCCAATTTTATGAAATATCATGGCAAATCTTAAATCCCCCATTTCTTAACACACAGGAAAAAGAGAGAATATTTGTAAAACATTTTTGATTTAATGTTTAATGTTGTGGTTTTTTTTTAG
Seq C2 exon
ACTGCTTAATGATAAAAGGGAACAAGCAAGAGAAGATCTCAAGGGGCTGGAGGAAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012462:ENSGALT00000020366:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]