HsaINT0088153 @ hg19
Intron Retention
Gene
ENSG00000168280 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:6325]
Coordinates
chr2:149856937-149857296:+
Coord C1 exon
chr2:149856937-149857038
Coord A exon
chr2:149857039-149857235
Coord C2 exon
chr2:149857236-149857296
Length
197 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
GGTTCCTTTTTGTTTTTCAGATT
3' ss Score
10.7
Exon sequences
Seq C1 exon
TTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTTAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTT
Seq A exon
GTGAGTGCACTCTAAATATTTCCTCTATTTTCTCTCATCCCCATGATATTCTGGTTAGATTGGGCTAATTTAAAAACAGACAATGGCTATTTGTGTGCTTGTTGGTGGGTTTTGTTGATTTATCTGTGGATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTGTGGTGGTCTATGGTTCCTTTTTGTTTTTCAG
Seq C2 exon
ATTGCTCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168280-KIF5C:NM_004522:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATCAGAAACTGCAACTGGA
R:
CACTGTCTCCTCCAGCCCTTT
Band lengths:
162-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)