BtaINT0082170 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018125 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:47340914-47341589:-
Coord C1 exon
chr2:47341488-47341589
Coord A exon
chr2:47340975-47341487
Coord C2 exon
chr2:47340914-47340974
Length
513 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
GGTTCCTTTCTGTTTTATAGATT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTTGAATCAGAAACTGCAACTAGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAACTGGAAAAGCTCTT
Seq A exon
GTGAGTACGCTTTAAATATTTCCTCTATTTTCTCTCATCCCCATGAAATCTCTGCCAGTCCACACTGGTGATTCAGGTACCAAGATATTCAGGTTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCTATAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTCCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCCTGTCCGACTCGTAGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCAGATATTCAGGTTAGGTTGGGCCAATTTAAGAACAGACCCTGAGTTGGTGAGTTGGTTTGTTTTGTTGATTTATCTGCAGATGCATGGTGTCTGTGAAAATCTCTGATGCCCCTTTGGTGGTTCATGGTTCCTTTCTGTTTTATAG
Seq C2 exon
ATTGCTCAATGATAAAAGGGAGCAAGCCAGAGAGGACCTCAAAGGGCTGGAGGAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018125:ENSBTAT00000024127:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]