MmuALTA0002670-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59816732-59822027:-
Coord C1 exon
chr2:59821839-59822027
Coord A exon
chr2:59816759-59816764
Coord C2 exon
chr2:59816732-59816758
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTGCTCTGCTTGGTTTTGAGGTG
3' ss Score
3.42
Exon sequences
Seq C1 exon
GACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAG
Seq A exon
GTGCAG
Seq C2 exon
AGTGGTGGCGAACCACAGATGGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-26-19,26-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=NA C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: