MmuEX0007719 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59816600-59839613:-
Coord C1 exon
chr2:59839563-59839613
Coord A exon
chr2:59821839-59822027
Coord C2 exon
chr2:59816600-59816764
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTCCCCTCCCAGGAC
3' ss Score
11.75
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTG
Seq A exon
GACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAG
Seq C2 exon
GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX2-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.445 C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAGCTGGGAAGTCCAA
R:
TCAGGACCATTTCGACTGCTC
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: