DreEX6020961 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11681812-11702318:+
Coord C1 exon
chr6:11681812-11681979
Coord A exon
chr6:11699715-11699915
Coord C2 exon
chr6:11702163-11702318
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTGTTGGTGCAGGTC
3' ss Score
9.18
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATATGGAGTCTGGAGAACGGCTGGCCTCGCCTTCCGCCACCCCGGCCTCCGTCCACACCGCCACCTCAGTGTCATCATCTTCCTCTTCCTCCTCTTCCTCATCCACAGCAGCCTCCAATGCCAAGAGCAGCCTGAACCACGGAGCCACGGCCTCGCTCGGCACATGCG
Seq A exon
GTCCTCTGTTTGGGTTGACTGGCAGTGACCAGCCTTTTAGTGTCAGCTCAGTGACCTCTGTGCCCAGTGCTTACCCTCTCATGGCCCATCCAGCCTTCGGTCTGCTCTCACCAGCGACGGTCCGCCCAGAGTTTGGAGGTTTAGGAGGATTGGGGGTCTCTGCTGCCCTCGCAGCTCATCCTCAACTAGGAGCCTTCTCAG
Seq C2 exon
AATGGTGGAGAGCAGCAGAAGCACATGGGCGGAGTCCTCCAACCTTCTTCCCGCCTTTCCTGGGTCTGCCCCCAATATTTGCCCCGCCCCTTCACAACCACGAGGCCAATCCGTACACATCCAAAACGCCTAGCAAGAGCAGCCAGGCCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=0.012 C2=0.547
Domain overlap (PFAM):
C1:
PF031538=TFIIA=PU(16.9=91.1)
A:
PF031538=TFIIA=FE(22.2=100)
C2:
PF031538=TFIIA=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAGTCTGGAGAACGGCT
R:
GGCGTTTTGGATGTGTACGGA
Band lengths:
297-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]