MmuEX6101458 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59962021-60125697:-
Coord C1 exon
chr2:60125463-60125697
Coord A exon
chr2:60006043-60006189
Coord C2 exon
chr2:59962021-59962630
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCTTCTGTCATAGATA
3' ss Score
9.77
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGCGAGCGGCGGAAGACGGGGACGGAGGGAGCCAGGGCTTTCGCGATCACGGATCTCACCTCCACTCCAACTCCCTAGACTTTCTGGCAGGAATTAGAAGAGAAATAAGGAGGCGGTGGGGATTCCGAAAAGCTTAACCCGCACCCGGGAAGGGCGAAAATCCCTTCCCCCGCAACTCAGTTCGAAAGTGAAG
Seq A exon
ATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTG
Seq C2 exon
GAACAATATAAGCAGACATTCCCATCACAAGGAAAGAAACAGGAGATGGGGAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAACTACCACTAGATAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGTAAGATTAACGAAAATGTCTCAAGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGGGAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGCGGGTCAGCAATGACGCAACCCCGCTCAAAGCGCACCATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTGGTGGAACAGTTTAGAGGGACAGATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX2-4/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.695 C2=0.985
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0334410=Daxx=PD(35.0=58.8),PF104464=DUF2457=PU(57.4=38.2),PF0334410=Daxx=PU(43.8=38.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCAACTCAGTTCGAAAGT
R:
CGGAGCTTCTTGAATGACGCT
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types