HsaEX0007728 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159453613-159555865:-
Coord C1 exon
chr2:159555823-159555865
Coord A exon
chr2:159478575-159478721
Coord C2 exon
chr2:159453613-159453801
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACATTTTCCCTTCTCATAGATA
3' ss Score
8.8
5' ss Seq
GTGGTGAAT
5' ss Score
1.79
Exon sequences
Seq C1 exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACATTGATCACA
Seq A exon
ATATGGAGTCTGGAGAACGGTTACCATCCTCAGCAGCCTCCTCTACTACACCAACTTCATCTTCGACACCTTCTGTGGCTTCAGTAGTTTCAAAAGGTGGCCTTTCCACTGGAGTTGCTTCACTTAGCTCTACAATCAACCCATGTG
Seq C2 exon
GACATTTATTCAGAACAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAACTAGCATCTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'16-25,'16-20,31-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.592 C2=0.221
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCAACAGTGATGTCAC
R:
AAGATGCTAGTTGGGGATGTGC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development