DreEX0016651 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11614932-11699915:+
Coord C1 exon
chr6:11614932-11614975
Coord A exon
chr6:11681812-11681979
Coord C2 exon
chr6:11699715-11699915
Length
168 bp
Sequences
Splice sites
3' ss Seq
GATTGGATTGTGCTTGACAGATA
3' ss Score
6.18
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GTGGACAAGCAGTGATGTCACATAGCTGAGGACACTCCCACTCA
Seq A exon
ATATGGAGTCTGGAGAACGGCTGGCCTCGCCTTCCGCCACCCCGGCCTCCGTCCACACCGCCACCTCAGTGTCATCATCTTCCTCTTCCTCCTCTTCCTCATCCACAGCAGCCTCCAATGCCAAGAGCAGCCTGAACCACGGAGCCACGGCCTCGCTCGGCACATGCG
Seq C2 exon
GTCCTCTGTTTGGGTTGACTGGCAGTGACCAGCCTTTTAGTGTCAGCTCAGTGACCTCTGTGCCCAGTGCTTACCCTCTCATGGCCCATCCAGCCTTCGGTCTGCTCTCACCAGCGACGGTCCGCCCAGAGTTTGGAGGTTTAGGAGGATTGGGGGTCTCTGCTGCCCTCGCAGCTCATCCTCAACTAGGAGCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'7-6,'7-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.804 C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
PF031538=TFIIA=PU(16.9=91.1)
C2:
PF031538=TFIIA=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAAGCAGTGATGTCAC
R:
CTGAGAAGGCTCCTAGTTGAG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]