BtaEX0005314 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57138534-57145228:+
Coord C1 exon
chr5:57138534-57138634
Coord A exon
chr5:57142905-57143042
Coord C2 exon
chr5:57144635-57145228
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCCCCTCCTACAGAAA
3' ss Score
12.18
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAAACTGGGAGATAGTGAAGGACAGGGAAGCCTGGCATGCTGCAGTCCATGGGGTTGCAAAGAGTTGGACACGATTGCGCGCTGAACCACAAAAGTATACA
Seq A exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCCCCTGCACCTGCTGCCTCAGGACTGAAACCCTCTCCCTCCTCAGGGGAGGGGCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq C2 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAACGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAGTACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCACAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTCTATGATTCCTTTCCCGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCCAGCATCCAGACCTTTGCACCCTCCCAGGAGGTAGGCAGCGGTATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'6-4,'6-3,7-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.829
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTTGCAAAGAGTTGGACA
R:
AGAACTGGGAGAGAAGGGGTG
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development