MmuEX6052093 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128096439-128111348:+
Coord C1 exon
chr10:128096439-128096523
Coord A exon
chr10:128108894-128109031
Coord C2 exon
chr10:128110755-128111348
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTCTCCGTCCTACAGAAA
3' ss Score
10.96
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
Seq A exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq C2 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACAATACCCGCTCAACGGTATCCTTGGGGGCAACCGACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGATCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'6-12,'6-9,12-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.978 C2=0.832
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGACACCAGGAAAGCA
R:
AAAGAAGGGGTGGGTCCTTGA
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types