BtaEX0005318 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:36998168-37025144:+
Coord C1 exon
chr2:36998168-36998314
Coord A exon
chr2:37020517-37020705
Coord C2 exon
chr2:37024977-37025144
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTTTCCCTCCCAGGAC
3' ss Score
11.91
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ACATGGAGTCTGGAGAACGGTTACCATCCTCTACAGCCTCCTCTGCTACACCGACTTCATCCTCGATCCCTTCTGTGGCTTCATCAGTTTCAAAAGGCGGCCTTTCCACGGGAGCTGCTTCACTTAGCTCTACAATCAACCCATGTG
Seq A exon
GACATTTATTCAGAGCAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCCCATCCCCAACTAGCGTCTTTTCCAG
Seq C2 exon
GTGCAGAATGGTGGCGAACAACAGATGTTCATACACGTGCAGGGGCAGCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCTGGAAAAAGTAATCGAAATGGTCCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.255 C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGTCTGGAGAACGGT
R:
CTGGAGGAGCAAACAGTGGTG
Band lengths:
243-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development