MmuEX0007719 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59978543-60001556:-
Coord C1 exon
chr2:60001506-60001556
Coord A exon
chr2:59983782-59983970
Coord C2 exon
chr2:59978543-59978707
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTCCCCTCCCAGGAC
3' ss Score
11.75
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTG
Seq A exon
GACATTTATTCAGAGCAGCTGGGGATCAGCCGTTTAACCTGTCCACAGTGCCGAGTGCCTTCCCAATGCTCAGCCACCCAGGCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAGCTAACATCTTTTCCAG
Seq C2 exon
GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX2-6/10=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.438 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAGCTGGGAAGTCCAA
R:
TCAGGACCATTTCGACTGCTC
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types