RnoEX6016954 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46046047-46153371:-
Coord C1 exon
chr3:46153334-46153371
Coord A exon
chr3:46090746-46090889
Coord C2 exon
chr3:46046047-46046211
Length
144 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCCTTCTGTCATAGAGA
3' ss Score
7.82
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CCCAACAGTGATGTCACAAGATTGACCACACTGACACA
Seq A exon
AGATGGAGTCTGGAGAACGGTTGCCGTCCTCACCAGCCCCTTCCACTACACCAACATCGTCGGCTCCTTCCGTGGCTTCAGCCGTTTCTAAGAGCAGCCTTCCCACGGGAGCTGCTTCACTTGGCTCTGCAGCCAGCCCATGTG
Seq C2 exon
GTGCAGAGTGGTGGCGAACCACAGATGGTCACTCTCGTGCAGGAACGCCCTTCTTTCCTCCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCAAGGACTTCTGGGAAGAGCAATCGAAATGGTCCCGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'4-11,'4-6,11-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.953 C2=0.961
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000081302fB1911
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACAAGATTGACCACAC
R:
TTTTCGGGACCATTTCGATTGC
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]