MmuEX6101458 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59839563-59914968:-
Coord C1 exon
chr2:59914927-59914968
Coord A exon
chr2:59844100-59844246
Coord C2 exon
chr2:59839563-59839613
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCTTCTGTCATAGATA
3' ss Score
9.77
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACA
Seq A exon
ATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTG
Seq C2 exon
TACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'15-16,'15-14,22-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.671 C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCAACAGTGATGTCAC
R:
GACACTGAGTCAGGTGATACC
Band lengths:
91-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: