GgaEX6043389 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38240585-38269254:-
Coord C1 exon
chr7:38269218-38269254
Coord A exon
chr7:38245223-38245378
Coord C2 exon
chr7:38240585-38240746
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGTCTCTTTTTTTAGATA
3' ss Score
12.55
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAACAGCGATGTCACAGAACTGAACACATTTGTCACA
Seq A exon
ATATGGAGTCTGGAGAGCGGTTAACGTCGTCATCAGTCTCTTCAACTGCAGCTGCTTCATCTCCAGTGTCTTCTACACCTTCTGTAGCTTCTGCGGTTTCCAAGAGTGGCCTTACCACTGGAGCTGCGTCGTTGAGTTCCACAATCAACACGGGTG
Seq C2 exon
AATGGTGGCGAACAGCGGACTCTCACTCTCGTTCTGGGGCAGCTTTTTTCCCACCACTCTTGGGCATCTCACCGCTCTTTGCACCTCCTGCCCAAAACCATGATTCTACTCCATTCCACCCAAGAACTACAGGAAAAAATAATCGTGGCAGTTTAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'0-6,'0-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.669 C2=0.640
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGATGTCACAGAACTGA
R:
CTTTTTCTAAACTGCCACGATTATTT
Band lengths:
197-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]