BtaEX6009644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:36897618-37020705:+
Coord C1 exon
chr2:36897618-36897660
Coord A exon
chr2:36998168-36998314
Coord C2 exon
chr2:37020517-37020705
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATTTGCCCTCTTCCCATAGACA
3' ss Score
10.22
5' ss Seq
GTGGTGAAT
5' ss Score
1.79
Exon sequences
Seq C1 exon
GTTTCTCAACAGTGATGTCACAAGATTGACCACATTGATCACA
Seq A exon
ACATGGAGTCTGGAGAACGGTTACCATCCTCTACAGCCTCCTCTGCTACACCGACTTCATCCTCGATCCCTTCTGTGGCTTCATCAGTTTCAAAAGGCGGCCTTTCCACGGGAGCTGCTTCACTTAGCTCTACAATCAACCCATGTG
Seq C2 exon
GACATTTATTCAGAGCAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCCCATCCCCAACTAGCGTCTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'5-7,'5-5,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.551 C2=0.255
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACAAGATTGACCACA
R:
TGGAAAAGACGCTAGTTGGGG
Band lengths:
220-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]