HsaEX0007728 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160310124-160412376:-
Coord C1 exon
chr2:160412334-160412376
Coord A exon
chr2:160335086-160335232
Coord C2 exon
chr2:160310124-160310312
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACATTTTCCCTTCTCATAGATA
3' ss Score
8.8
5' ss Seq
GTGGTGAAT
5' ss Score
1.79
Exon sequences
Seq C1 exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACATTGATCACA
Seq A exon
ATATGGAGTCTGGAGAACGGTTACCATCCTCAGCAGCCTCCTCTACTACACCAACTTCATCTTCGACACCTTCTGTGGCTTCAGTAGTTTCAAAAGGTGGCCTTTCCACTGGAGTTGCTTCACTTAGCTCTACAATCAACCCATGTG
Seq C2 exon
GACATTTATTCAGAACAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAACTAGCATCTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'3-11,'3-8,8-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.571 C2=0.215
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCAACAGTGATGTCAC
R:
AAGATGCTAGTTGGGGATGTGC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)