BtaALTA0004243-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37020517-37025144:+
Coord C1 exon
chr2:37020517-37020705
Coord A exon
chr2:37024977-37024982
Coord C2 exon
chr2:37024983-37025144
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTTTGGTGTTTGGCTTTGAGGTG
3' ss Score
1.67
Exon sequences
Seq C1 exon
GACATTTATTCAGAGCAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCCCATCCCCAACTAGCGTCTTTTCCAG
Seq A exon
GTGCAG
Seq C2 exon
AATGGTGGCGAACAACAGATGTTCATACACGTGCAGGGGCAGCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCTGGAAAAAGTAATCGAAATGGTCCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-10-9,10-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGTTTGGGGACACTTG
R:
AACATCTGTTGTTCGCCACCA
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development