RnoALTA0005636-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46046047-46087776:-
Coord C1 exon
chr3:46087676-46087776
Coord A exon
chr3:46046170-46046211
Coord C2 exon
chr3:46046047-46046169
Length
42 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTGCTCTGCTTGGTTTTGAGGTG
3' ss Score
3.42
Exon sequences
Seq C1 exon
CTTCCAACTTGGATGGAGCCAGATTCAGTATTAAAAATTTGTGTTTACAGTTCTTGAAGCTGGGAAGTCCAAGATCAAGGTTTCACCTGACTCAGTGTCTG
Seq A exon
GTGCAGAGTGGTGGCGAACCACAGATGGTCACTCTCGTGCAG
Seq C2 exon
GAACGCCCTTCTTTCCTCCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCAAGGACTTCTGGGAAGAGCAATCGAAATGGTCCCGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-12-13,12-12,12-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTTGGATGGAGCCAGA
R:
GCAAACAGTGGTGGAATTCCC
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]