HsaALTA0000914-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159448316-159453801:-
Coord C1 exon
chr2:159453613-159453801
Coord A exon
chr2:159448404-159448409
Coord C2 exon
chr2:159448316-159448403
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTGGTTTGTTTGGTTTTGAGGTG
3' ss Score
2.35
Exon sequences
Seq C1 exon
GACATTTATTCAGAACAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAACTAGCATCTTTTCCAG
Seq A exon
GTGCAG
Seq C2 exon
AATGGTGGCGAACAACTGATGCTCATACTCGTACAGGAGCAACCTTCTTTCCACCATTACTGGGAATTCCACCACTATTTGCTCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-38-29,38-28,38-27-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGTTTGGGGACACTTG
R:
ATGAGCATCAGTTGTTCGCCA
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains