HsaEX0007742 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159446782-159453801:-
Coord C1 exon
chr2:159453613-159453801
Coord A exon
chr2:159448242-159448409
Coord C2 exon
chr2:159446782-159446975
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTGTTTGGTTTTGAGGTG
3' ss Score
2.35
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GACATTTATTCAGAACAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCACATCCCCAACTAGCATCTTTTCCAG
Seq A exon
GTGCAGAATGGTGGCGAACAACTGATGCTCATACTCGTACAGGAGCAACCTTCTTTCCACCATTACTGGGAATTCCACCACTATTTGCTCCCCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCGGGAAAAAGTAATCGAAATGGTCCCGAAAAAG
Seq C2 exon
GTGTAAATGGGTCAATAAATGGAAGTAATACATCATCTGTAATTGGTATCAACACATCTGTACTATCCACTACTGCTTCAAGTTCCATGGGACAAACTAAAAGTACAAGCTCAGGTGGAGGAAATCGAAAATGTAATCAGGAACAAAGCAAAAACCAGCCTTTGGATGCTAGAGTTGACAAAATCAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'38-31,'38-28,41-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.688 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCAGTCTTTGGTCTA
R:
TCGATTTCCTCCACCTGAGCT
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development