RnoEX0014175 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46044979-46087776:-
Coord C1 exon
chr3:46087676-46087776
Coord A exon
chr3:46046047-46046211
Coord C2 exon
chr3:46044979-46045170
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTGCTTGGTTTTGAGGTG
3' ss Score
3.42
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
CTTCCAACTTGGATGGAGCCAGATTCAGTATTAAAAATTTGTGTTTACAGTTCTTGAAGCTGGGAAGTCCAAGATCAAGGTTTCACCTGACTCAGTGTCTG
Seq A exon
GTGCAGAGTGGTGGCGAACCACAGATGGTCACTCTCGTGCAGGAACGCCCTTCTTTCCTCCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCAAGGACTTCTGGGAAGAGCAATCGAAATGGTCCCGAAAAAG
Seq C2 exon
GTATAAATGGGTCAGTTAATGGAAACAGTGCAGCATCTGTACATGGTGTCAATACATCTGGACTGTCCACTCCTGCTTCAAGTTCCATGGGACAGAATCAAAGCACAAGCTCAGGTGGAGGAAACCTAAAATGTCATCAGGAACAAAACAAAAGCCAGCCTGTGGATGCCAGAGCCGACAAAATCAAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'12-14,'12-11,15-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.961 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041477=Nop14=PU(20.2=52.3),PF0334410=Daxx=PU(10.6=36.9)
Main Inclusion Isoform:
ENSRNOT00000085885fB1912
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCTTGAAGCTGGGAAGT
R:
TTGATTTTGTCGGCTCTGGCA
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]