BtaEX6009643 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37020517-37026252:+
Coord C1 exon
chr2:37020517-37020705
Coord A exon
chr2:37024977-37025144
Coord C2 exon
chr2:37026059-37026252
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTTTGGTGTTTGGCTTTGAGGTG
3' ss Score
1.67
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GACATTTATTCAGAGCAGCTGGGGATCAACCGTTTAACCTGTCCACAGTGTCGAGTGCCTTCCCAATGGTCAGCCACCCAGTCTTTGGTCTACATTCAGCCAGCTCAGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCTTAGCCGCCCATCCCCAACTAGCGTCTTTTCCAG
Seq A exon
GTGCAGAATGGTGGCGAACAACAGATGTTCATACACGTGCAGGGGCAGCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCTGGAAAAAGTAATCGAAATGGTCCTGAAAAAG
Seq C2 exon
GTGTAAATGGATCAATAAATGGAAACAGTACATCATCTGTATCTGGTATCAACACATCTGTACTGTCCACTACTGCTTCAAGTTCTGTGGGACAAACGAAAAGTGTAAGCTCAGGTGGAGGAAATAGAAAATGTAATCAGGAACAAAACAAAACCCAGCCTTTGGATGCTAGAGCTGACAAAATCAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'10-10,'10-8,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.596 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0334410=Daxx=PU(7.8=41.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGTTTGGGGACACTTG
R:
GCTCTAGCATCCAAAGGCTGG
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]