DreEX0016645 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11699715-11704613:+
Coord C1 exon
chr6:11699715-11699915
Coord A exon
chr6:11702163-11702318
Coord C2 exon
chr6:11704408-11704613
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTTTTTTTTCTCAGAAT
3' ss Score
9.66
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCCTCTGTTTGGGTTGACTGGCAGTGACCAGCCTTTTAGTGTCAGCTCAGTGACCTCTGTGCCCAGTGCTTACCCTCTCATGGCCCATCCAGCCTTCGGTCTGCTCTCACCAGCGACGGTCCGCCCAGAGTTTGGAGGTTTAGGAGGATTGGGGGTCTCTGCTGCCCTCGCAGCTCATCCTCAACTAGGAGCCTTCTCAG
Seq A exon
AATGGTGGAGAGCAGCAGAAGCACATGGGCGGAGTCCTCCAACCTTCTTCCCGCCTTTCCTGGGTCTGCCCCCAATATTTGCCCCGCCCCTTCACAACCACGAGGCCAATCCGTACACATCCAAAACGCCTAGCAAGAGCAGCCAGGCCTCCAAAG
Seq C2 exon
GTGTGAACGGAGCGGTGAATGGTCGTTCGCTGTCTCCCTCTGTGGCGAAAGGAACGGTTTCGGCTTCTGCTTCCCCCTCCCCCGCGCTCCGGCCCCCTGAACACAGCCGGACACTCAACGCCAAAGCCCGCGACCGCAAGGCCAGTCACCATAGCAACAGCACAGGGGAGCTTCAGGAGAAACCCTCGCAGAAAACTAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'11-8,'11-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.547 C2=1.000
Domain overlap (PFAM):
C1:
PF031538=TFIIA=FE(22.2=100)
A:
PF031538=TFIIA=FE(17.2=100)
C2:
PF031538=TFIIA=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGACCAGCCTTTTAGT
R:
CAGAAGCCGAAACCGTTCCTT
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]